Additional file 1 of Epigenetic regulation of seed-specific gene expression by DNA methylation valleys in castor bean

Additional file 1: Table S1. Summary of RNA-seq data generated from 16 diverse tissues in castor bean. Table S2. Genes’ expression level (FPKM) in 16 different tissues of castor bean. Table S3. All tissue-specific genes in castor bean. Table S4. Seed stage-specific genes in castor bean. Table S5. Seed-specific genes related to lipid biosynthesis pathways in castor bean. Table S6. Conserved DNA methylation valleys (DMVs) in castor bean. Table S7. DMV genes in castor bean. Table S8. Conserved DMV genes among Arabidopsis, Soybean and Castor bean. Table S9. Differential histone modification regions between leaf and endosperm. Table S10. Seed-specific DMV genes potentially regulated by histone modifications. Table S11. Leaf-specific DMV genes potentially regulated by histone modifications. Table S12. Distal DMVs and the nearest genes in castor bean. Table S13. Distal DMVs of seed-specific genes potentially regulated by H3K27ac and/or H3K27me3. Table S14. All primers used in this study.