Manual nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of nocodazole treated HeLa cell (jrc_hela-nz-1)
收藏DataCite Commons2025-02-13 更新2025-04-16 收录
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https://janelia.figshare.com/articles/dataset/Manual_nuclei_segmentations_in_near-isotropic_reconstructed_volume_electron_microscopy_FIB-SEM_of_nocodazole_treated_HeLa_cell_jrc_hela-nz-1_/26513203/1
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<b>Annotation description</b>: Dense segmentations of nuclei in jrc_hela-nz-1 using Amira-Avizo (Thermo Fisher Scientific) and "Using Amira to manually segment organelles in vEM for machine learning V.3" protocol.<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Classes annotated</b>: Nuclei<b>Source (EM) dataset ID</b>: jrc_hela-nz-1<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 7.9 (X, Y, Z)<b>Source (EM) data dimensions (µm)</b>: 99.2 x 4.0 x 73.1 (X, Y, Z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24944784<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_hela-nz-1/jrc_hela-nz-1.zarr/recon-2/labels/inference/segmentations/nuc/<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_hela-nz-1
提供机构:
Janelia Research Campus
创建时间:
2025-02-13



