Additional file 3 of Genomic and transcriptomic insights into Raffaelea lauricola pathogenesis

Additional file 3: Supplemental Table S1 - Repetitive elements identified within genome assemblies. Supplementary Table S2. Predicted effector proteins (EffectorP 2.0) and differential expression for R. lauricola. Supplementary Table S3. Predicted effector proteins (EffectorP 2.0) for R. aguacate PL1004. Supplemental Table S4. Predicted secreted proteins unique to R. lauricola RL4 relative to R. aguacate PL1004. Supplementary Table S5. Genes encoding secreted proteins unique to R. aguacate PL1004 relative to R. lauricola RL4. Supplemental Table S6. Master annotation table with RNAseq data. Supplemental Table S7. R. lauricola differentially expressed genes. Supplementary Tabe S8. Number of CAZy family members in two Raffaelea genomes. Supplementary Table S9. Secondary metabolite cluster genes in R. lauricola RL4. Supplementary Table S10. Secondary metabolite cluster genes in R. aguacate PL1004. Table S11. Disease scores of the inoculated redbay trees at 60 days post inoculation. Table S12. Read pairs in fungus inoculated stem samples. Table S13. R. lauricola sulfur transporters. Table S14. R. lauricola and R. aguacate sulfur assimilation genes. Table S15. R. lauricola alternative sulfur regualtory genes.