Data Files for Mapping the Conformational Free Energy of Aspartic Acid in the Gas Phase and in Aqueous Solution
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https://figshare.com/articles/dataset/Data_Files_for_Mapping_the_Conformational_Free_Energy_of_Aspartic_Acid_in_the_Gas_Phase_and_in_Aqueous_Solution/16473693
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资源简介:
The data are divided in sub-projects where different systems were simulated with different force fields.
CHARMM_: simulations run with the CHARMM36 force field
AMBER_: simulations run with the AMBER FF99SB-ILDN force field
OPLS_: simulations run with the
OPLS-AA force field
Conformations_: ab initio (DFT-B3LYP & MP2) calculations on selected conformers
_NV.tar.gz: simulations of neutral Asp in vacuo
_ZW.tar.gz: simulations of zwitterionic Asp in water
_NW.tar.gz: simulations of neutral Asp in water
_ZV.tar.gz: simulations of zwitterionic Asp in vacuo
The simulations using force fields were run with the NAMD 2.9 molecular dynamics package and the metadynamics PLUMED 1.3 plug-in.
Ab initio geometry optimization and single point calculations were run with Gaussian 09. For a full description of the data files please see the accompanying ReadMe file.
创建时间:
2017-02-07



