Reproducibility archive for: Ileal mucosal state and postoperative recurrence in Crohn's disease: a multi-cohort evaluation of a fixed 21-gene transcriptomic signature

This record contains the analysis code, versioned configuration locks, exact software requirements, derived patient-level and summary result tables, provenance manifests, and structural smoke tests supporting the accompanying manuscript. The archive evaluates a fixed 21-gene ileal transcriptomic signature across baseline prognosis and concurrent mucosal-state analyses. Third-party source matrices and publisher supplements are not redistributed; the public-input manifest records their sources, verified versions, expected paths, and hashes. CrohnTwin-X results are same-source methodological reapplications rather than independent validation, and GSE102133 is retained only as a parent-lock dependency, not as evidence in the report.