test11

For more information about this data see this publication: XXX The publication GitHub is a good source of information: https://github.com/UK-SBCoA-EbbertLab/brain_cDNA_discovery There are also README files in the data that provide more information about what is contained in each directory. Basic information about main directory structure and files: reproducing_RNA_figures - Contains all references/annotations necessary for reproducing the stats, analysis, and figures for the RNA isoform analysis in the article. reproducing_nextflow_pipeline - Contains all references/annotations necessary for reproducing the NextFlow pipeline. proteomics - Fasta reference files files used for proteomics analysis with FragPipe and results output by FragPipe. transcriptomic_analysis_output - Contains output from transcriptomic analysis including: quality control, counts matrices, new RNA isoform annotations, and the Bambu R object. counts_transcript.txt - Transcript level counts (does not include any intronic reads).