File S1 - De Novo Transcriptome Assembly and Comparative Analysis of Differentially Expressed Genes in Prunus dulcis Mill. in Response to Freezing Stress

Contains the files: Table S1. The expression profiles of genes identified in anther tissue under control (HCA) and frost stress (HSA). The complete list of expressed genes and their level of expressions given in transcript per million (TPM). TPM_HSA and TPM_HCA indicate expression of gene under stress and control conditions, respectively. Table S2. The expression profiles of genes identified in ovary tissue under control (HCO) and frost stress (HSO). The complete list of expressed genes and their level of expressions given in transcript per million (TPM). TPM_HSO and TPM_HCO indicate expression of gene under stress and control conditions, respectively. Table S3. Gene expression profiles of commonly occuring transcript that are present in both ovary and anther tissues. The complete list of expressed genes and their level of expressions given in transcript per million (TPM). TPM_HSO and TPM_HSA indicate expression of gene under stress condition in ovary and anther, respectively. While, TPM_HCO and TPM_HCA show expression under control conditions. Table S4. Differentially expressed genes in anther tissue of almond under frost (HSA vs. HCA). Differentially expressed genes were identified using EBSeq package. The expression of any individual transcript was obtained by comparing its expression under stress condition (HSA) to that of control condition (HCA). The fold change cut-off was set at two fold with p-valueTable S5. Differentially expressed genes in ovary tissue of almond under frost (HSO vs. HCO). Differentially expressed genes were identified using EBSeq package. The expression of any individual transcript was obtained by comparing its expression under stress condition (HSO) to that of control condition (HCO). The fold change cut-off was set at two fold with p-valueTable S6. Biological process of differentially expressed genes in almond under frost stress. The complete list of biological processes is presented for the DE genes in both ovary (HSO vs. HCO) and anther (HSA vs. HCA). Table S7. Molecular function of differentially expressed genes in almond under frost stress. The complete list of Molecular functions is presented for the DE genes in both ovary (HSO vs. HCO) and anther (HSA vs. HCA). Table S8. Cellular comportments of differentially expressed genes in almond under frost stress. The complete list of cellular compartments is presented for the DE genes in both ovary (HSO vs. HCO) and anther (HSA vs. HCA). Table S9. Comparative analysis of Gene ontology of over-expressed genes in anther between almond and peach reference. Fisher’s exact test with p-valueTable S10. Comparative analysis of Gene ontology of down-expressed genes in anther between almond and peach reference. Fisher’s exact test with p-valueTable S11. Comparative analysis of Gene ontology of over-expressed genes in ovary between almond and peach reference. Fisher’s exact test with p-valueTable S12. Comparative analysis of Gene ontology of down-expressed genes in ovary between almond and peach reference. Fisher’s exact test with p-value (XLSX)