Additional file 6 of A genome-wide survey of copy number variations reveals an asymmetric evolution of duplicated genes in rice

Additional file 6: Table S18. The statistics of correlation analysis. a for each gene, the TPM values were divided into groups by different copy numbers. Difference analysis were performed in R. If there was/were significant difference between at least two groups of TPM values, this gene was defined as Exp_diff gene. Table S19. The changes in the average rate of increase with the copy number gradient of positively correlated genes. Values are means ± s.d.. Table S20. The fate of duplicated genes. a corresponds to the pairs at least one copy pseudogenized. b-d correspond to the pairs at least one copy neo-functionalized, sub-functionalized, and neo-functionalized/sub-functionalized, respectively. e corresponds to the pairs whose copy numbers were in line with the assembly results of 93 rice accessions. Table S21. The number of copy specific reads. Table S22. Primers used in this study.