Shadow Antibiogram: co-testing network data, Germany 2019–2023

This dataset contains processed, non-identifiable data and reproducibility materials for the manuscript "Network-based characterisation of latent co-testing patterns in antimicrobial susceptibility testing." Deposited materials include pairwise co-testing contingency tables, antibiotic metadata, pathogen cohort definitions, figure source data, analysis configuration files, and source code. The contingency tables capture joint observation of antimicrobial susceptibility results across antibiotic pairs, stratified by pathogen, specimen type, year, care setting, and ward type. These files support reconstruction of Jaccard, Dice, Cosine, and phi similarity matrices; FDR-filtered co-testing networks; Louvain community detection results; and all manuscript figures. Raw individual-level ARS surveillance records are excluded under data protection, surveillance governance, and data provider agreements. The deposited files contain no patient identifiers, laboratory identifiers, exact dates, free-text fields, or individual-level records.