Trypoxylus dichotomus RNA-seq Td11

RNA-seq analysis of Japanese rhinoceros beetly Trypoxylus dichotomus. We analyzed 16 RNA-seq libraries created from a wide variety of tissues of both sexes and developmental stages: 5 tissues (brain, hindgut, fat body, testis and ovary) and from whole embryos of 6 time points from middle to late developmental stages.

A set of GM4 gene models (doi: 10.6084/m9.figshare.17126306) were used as a reference.

5 files are included.
gene_count_matrix.csv : read count by gene
gene_cpm.tmm.txt : normalized count-per-million data with TMM method. (gene level)
transcript_count_matrix.csv : read count by transcript
transcript_cpm.tmm.txt : normalized count-per-million data with TMM method. (transcript level)
samples_info.xlsx : sample information

Note that IDs
(200, 201 ...) in samples_info.xlsx correspond to the column names in the count matrix files (gene_count_matrix.csv, gene_cpm.tmm.txt, transcript_count_matrix.csv, transcript_cpm.tmm.txt).