Raw 16S rRNA amplicon sequencing data for engineered calprotectin-responsive probiotics in treatment of inflammatory bowel disease

Raw 16S rRNA amplicon sequencing data (V4 region) of fecal microbiota from C57BL/6 mice with DSS-induced IBD (3% DSS, 5 days) following 5-day oral treatment with recombinant EcN (optimized ykgMO promoter for IL-2 release). DNA extracted with E.Z.N.A. Stool DNA Kit (OMEGA); libraries prepared with NEBNext Ultra II FS Kit (NEB); sequenced on Illumina HiSeq X Ten platform. Includes paired-end FASTQ files.