Data for EBP-Nor workshop in 2024

This repository hosts data used for a workshop given by EBP-Nor (https://www.ebpnor.org/) in spring 2024. The workshop itself is hosted at GitHub (https://github.com/ebp-nor/workshop-2024). The PacBio reads were downloaded like this: wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR654/000/ERR6548410/ERR6548410.fastq.gz and subsampled like this: seqtk sample ERR6548410.fastq.gz 420000 |gzip > ERR6548410_30x.fastq.gz seqtk sample ERR6548410.fastq.gz 300000 |gzip > ERR6548410_22x.fastq.gz seqtk sample ERR6548410.fastq.gz 360000 |gzip > ERR6548410_26x.fastq.gz The Hi-C reads were downloaded like this: wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/001/ERR6054981/ERR6054981_1.fastq.gz wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/001/ERR6054981/ERR6054981_2.fastq.gz and subsampled like this: seqtk sample ERR6054981_1.fastq.gz 30000000 |gzip > ERR6054981_1_60x.fastq.gz seqtk sample ERR6054981_2.fastq.gz 30000000 |gzip > ERR6054981_2_60x.fastq.gz seqtk sample ERR6054981_1.fastq.gz 25000000 |gzip > ERR6054981_1_50x.fastq.gz seqtk sample ERR6054981_2.fastq.gz 25000000 |gzip > ERR6054981_2_50x.fastq.gz