Locus-specific simulation for SparsePro paper
收藏Figshare2022-08-26 更新2026-04-28 收录
下载链接:
https://figshare.com/articles/dataset/Locus-specific_simulation_for_SparsePro_paper/20540376
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资源简介:
Locus-specific simulation data for SparsePro paper: 20_31000000_32000000.zip: contains simulated GWAS summary statistics in the chr20:31000000-32000000 locus with K=1,2,5,10 (number of causal variants) and W=0,1,2 (log-relative enrichment). 21_31000000_32000000.zip: contains simulated GWAS summary statistics in the chr21:31000000-32000000 locus with K=1,2,5,10 (number of causal variants) and W=0,1,2 (log-relative enrichment). 22_31000000_32000000.zip: contains simulated GWAS summary statistics in the chr22:31000000-32000000 locus with K=1,2,5,10 (number of causal variants) and W=0,1,2 (log-relative enrichment). get_master.py: script for preparing master file for FINEMAP. prepare_ss.sh: bash command for preparing summary statistics for running different fine-mapping methods. run_finemap.sh: bash command for running FINEMAP. run_paintor_anno.sh: bash command for running PAINTOR+. run_paintor_no.sh: bash command for running PAINTOR-. run_SP_all.sh: bash command for running SparsePro- and SparsePro+. run_susie_rss.sh: bash command for running SuSiE. sparsepro_zld.py: script for running SparsePro-/+. susie_rss.py: script for running SuSiE. plot_locus_simulation.ipynb: scripts for plotting locus simulation results.
创建时间:
2022-08-26



