Supplement 1. Scripts and multi-colony Atlantic Puffin data for running the mixed model for survival at the multi-population scale.

File List marrayp1_Fair.dat - M-arrays for the first trap-dependence age class in Fair Isle<br> marrayp1_May.dat - M-arrays for the first trap-dependence age class in Isle of May <br> marrayp1_Rost.dat - M-arrays for the first trap-dependence age class in Røst <br> marrayp1_Skomer.dat - M-arrays for the first trap-dependence age class in Skomer <br> marrayp2_Fair.dat - M-arrays for the second trap-dependence age class in Fair Isle<br> marrayp2_May.dat - M-arrays for the second trap-dependence age class in Isle of May <br> marrayp2_Rost.dat - M-arrays for the second trap-dependence age class in Røst <br> marrayp2_Skomer.dat - M-arrays for the second trap-dependence age class in Skomer <br> SST.dat - covariate values = sea surface temperature in the vicinity of the breeding colonies <br> multipoppuffins.R - R script which reads in the data and calls WinBUGS<br> multipoppuffins.bug - The WinBUGS script which runs the model with sea surface temperature (SST) as a covariate and both global- and local-scale variances <br> multipoppuffins.zip - All files at once Description All the .dat files are text files containing the data, in the form of M-arrays, described and analyzed in the original paper; multipoppuffins.R and multipoppuffins.bug are the scripts with which the model described in the original paper and in Appendix A can be built and fitted to these data.