Additional file 5: of HER2 is not a cancer subtype but rather a pan-cancer event and is highly enriched in AR-driven breast tumors

Mutation and copy number profiles of breast tumors. (A) Mutation profile for 23 genes previously shown to be significantly mutated in breast cancer [13] in 679 TCGA breast tumors with exome-seq data. (B) Mutation profile for 21 genes (FOXA1 and MLL3 are not available) in 1039 Metabric tumors with targeted sequence data. (C) Copy number profile for 28 genes previously shown to have subtype-specific copy number alterations [13], in 864 TCGA breast tumors. (D) Copy number profile for 28 genes in 1107 Metabric tumors. PAM50 subtype and HER2A status are provided. (XLSX 417 kb)