SMRT PacBio Sequel sequencing of 12 Silene herbarium specimens

NIAID Data Ecosystem2026-05-01 收录

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https://zenodo.org/record/8419068

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The folder includes reads sequenced with SMRT PacBio Sequel from twelve Silene herbarium specimens. Both demultiplexed and non demultiplexed reads are included. The demultiplexed reads are in folder called "demultiplexed.zip", in files starting with "Barcodenumber_speciesnamesamplingyear.fastq". The barcode number and sequence can be found below, in the description. The non demultiplexed reads are in file called "ps_248_001.ccsreads.fastq.gz". #NebNext Barcodes #Adapter('Barcode 1 (forward)', # start_sequence=('BC01', 'CGTGAT'), # end_sequence=('BC01_rev', 'ATCACG')), #Adapter('Barcode 2 (forward)', # start_sequence=('BC02', 'ACATCG'), # end_sequence=('BC02_rev', 'CGATGT')), #Adapter('Barcode 3 (forward)', # start_sequence=('BC03', 'GCCTAA'), # end_sequence=('BC03_rev', 'TTAGGC')), #Adapter('Barcode 4 (forward)', # start_sequence=('BC04', 'TGGTCA'), # end_sequence=('BC04_rev', 'TGACCA')), #Adapter('Barcode 5 (forward)', # start_sequence=('BC05', 'CACTGT'), # end_sequence=('BC05_rev', 'ACAGTG')), #Adapter('Barcode 6 (forward)', # start_sequence=('BC06', 'ATTGGC'), # end_sequence=('BC06_rev', 'GCCAAT')), #Adapter('Barcode 7 (forward)', # start_sequence=('BC07', 'GATCTG'), # end_sequence=('BC07_rev', 'CAGATC')), #Adapter('Barcode 8 (forward)', # start_sequence=('BC08', 'TCAAGT'), # end_sequence=('BC08_rev', 'ACTTGA')), #Adapter('Barcode 9 (forward)', # start_sequence=('BC09', 'CTGATC'), # end_sequence=('BC09_rev', 'GATCAG')), #Adapter('Barcode 10 (forward)', # start_sequence=('BC10', 'AAGCTA'), # end_sequence=('BC10_rev', 'TAGCTT')), #Adapter('Barcode 11 (forward)', # start_sequence=('BC11', 'GTAGCC'), # end_sequence=('BC11_rev', 'GGCTAC')), #Adapter('Barcode 12 (forward)', # start_sequence=('BC12', 'TACAAG'), # end_sequence=('BC12_rev', 'CTTGTA')),]

创建时间：

2023-10-12

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