Additional file 1 of The expression of the NPR1-dependent defense response pathway genes in Persea americana (Mill.) following infection with Phytophthora cinnamomi

Additional file 1: Table S1. Plant proteomes obtained as input for orthologue identification using OrthoFinder v2.5.4. Table S2. Candidate NPR1 pathway-associated genes in Persea americana. Putative functional descriptions are the result of a combined annotation approach by using original functional annotations (Avocado Genome Consortium) and eggNOG-mapper, InterProScan and BLASTp descriptions. Candidates with no expression data, determined using baseMean following DeSeq2 analyses, were not assigned descriptors. Table S3. Protein-protein BLAST of identified Persea americana NPR1-dependent defense response pathway proteins. The NCBI non-redundant protein sequences database was used and limited by entrez entry Viridiplantae with an Expected (E) value cutoff 0.05, word size 3, BLOSUM 62, Gap cost (existence 11, extension 1), max hits per sequence 5. Table S4. Differentially expressed Persea americana NPR1- pathway-associated genes (log2(fold change; log2FC) > 0.58 | < -0.58, adjusted p-value (FDR; p-adj) < 0.05) at various time-points following inoculation of the partially resistant rootstock Dusa® and the susceptible rootstock R0.12 with Phytophthora cinnamomi, compared to a mock-inoculated control. lfcSE - standard error of log2FC. Table S5. Differentially expressed Persea americana NPR1- pathway-associated genes (log2(fold change; log2FC) > 0.58 | < -0.58, adjusted p-value (FDR; p-adj) < 0.05) comparing the expression of uninoculated (Control) sample libraries or various Phytophthora cinnamomi inoculated libraries, of the partially resistant rootstock Dusa® with the respective libraries in the susceptible rootstock R0.12. lfcSE - standard error of log2FC.