Additional file 1 of The gut microbiota in multiple sclerosis varies with disease activity

Additional file 1: Table S1. Contrasts in plasma cytokines between patients with multiple sclerosis and HC; Table S2. Fecal water measurements and bacterial cell count index; Table S3. Characteristics of patients at baseline and after follow-up; Table S4. Pairwise PERMANOVA between subgroups of patients and HC (tested on Bray-Curtis dissimilarity based on MGS abundance); Table S5. Contrasts in Metagenomics Species (MGS) between patients with multiple sclerosis and HC; Table S6. Contrast in features related to methanogenesis between CA and CNA in treatment-naïve patients (n = 31); Table S7. Pairwise PERMANOVA between subgroups of patients and HC (tested on Bray-Curtis dissimilarity based on viral abundance); Table S8. Differential gut viral species between cases and healthy controls identified by MaAslin2 package.