Data from: Rocha et al. (2016) The evolutionary history of Trachylepis skinks from the Seychelles islands: introgressive hybridization, morphological evolution and geographic structure. Biological Journal of the Linnean Society, in press.

Data from: Rocha et al. (2016) The evolutionary history of Trachylepis skinks from the Seychelles islands: introgressive hybridization, morphological evolution and geographic structure. Biological Journal of the Linnean Society, in press.alignment files used for phylogenetic analyses, networks, summary statistics, etc. the different versions of the phase inferences are given. see main ms and file descriptions bellow.FILE TITLE: trachylepis_cytb_haps.nexDESCRIPTION: nexus file of haplotypes of cytochrome-b used to phylogenetic analysis (Figure 2). Full dataset can be obtained from genbank with acession nrs provided in manuscript (Table S1)FILE TITLE: trachylepis_cytb_PLs.nexDESCRIPTION: nexus file of sequences of cytochrome-b used to the networks on Fig2A.FILE TITLE: trachylepis_cytb_MAsW.nexDESCRIPTION: nexus file of sequences of cytochrome-b used to the networks on Fig2B.FILE TITLE: trachylepis_cmos_phased8N.phyDESCRIPTION: phylip file used for cmos network construction. Please note comment lines inside with info on seq id's. Here, positions were phases were resolved with FILE TITLE: trachylepis_rag2_phased8N.phyDESCRIPTION: phylip file used for rag2 network construction. Please note comment lines inside with info on seq id's. Here, positions were phases were resolved with FILE TITLE: trachylepis_reln_phased8N.phyDESCRIPTION: phylip file used for reln network construction. Please note comment lines inside with info on seq id's. Here, positions were phases were resolved with FILE TITLE: trachylepis_mc1R_phased8N.phyDESCRIPTION: phylip file used for mc1r network construction. Please note comment lines inside with info on seq id's. Here, positions were phases were resolved with FILE TITLE: trachylepis_pdc_phased8N.phyDESCRIPTION: phylip file used for pdc network construction. Please note comment lines inside with info on seq id's. Here, positions were phases were resolved with FILE TITLE: phased_amb_for_ebsp.zipDESCRIPTION: phylip files (nuclear genes alignments) used for ebsp analyses, where positions whose phases were resolved with