Additional file 1: Table S1. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

Gene compositions of red algal plastid genomes. Table S2. Representative homologous gene sets of red algal plastid genes. Table S3. Intron prediction of plastid intronic proteins in five basal red algal taxa. Tables S4, S7, and S15. List of concatenated proteins used in the ML tree searches. Tables S5 and S6. Types of angiosperm and gymnosperm plastid genomes. Tables S8 and S9. Taxon sampling of cyanobacterial genomes and their gene groups. Table S10. Predicted primary plastid orthologous gene families compared with cyanobacterial 297 OGF. Table S11. Predicted nuclear-encoded OGFs in the primary plastid groups. Table S12. EGT trees information. Table S13. Composition of OGFs in the primary plastid groups. Table S14. Sample and strain information. Table S16. Cyanobacterial proteins from four strains used in the primary plastid ML tree. Table S17. Taxon sampling of primary plastid groups in orthologous family analysis. Table S18. Number of species and genes in OGF analysis. Table S19. Taxon samples and their genes in the primary endosymbiosis groups. (XLSX 2166 kb)