Additional file 10 of Nepali oral microbiomes reflect a gradient of lifestyles from traditional to industrialized

Additional file 10: S9 Table—Read counts through each sequence processing step. Read counts at each step of sequence processing, starting with raw demultiplexed reads and all the way through DADA2, merging, and chimera removal. “Input” column refers to the number of raw reads obtained per sample after sequencing, “filtered” refers to the number of reads remaining after initial read QC, “denoised” refers to the number of reads remaining after denoising in DADA2, “nochim” refers to the number of reads remaining after chimeric sequences were removed, and “retained_overall” is the total proportion of reads retained following all QC steps from the input amount. Table does not include the samples that failed to pass initial read QC.