Additional file 1 of Gene expressions between obligate bamboo-eating pandas and non-herbivorous mammals reveal converged specialized bamboo diet adaptation

Additional file 1: Table S1. Description of the 49 RNA-seq libraries for eight mammals used in this study including giant and red pandas. Table S2. Normalized expression levels of shared 409 DEGs in liver samples of both panda species. Table S3. Normalized expression levels of shared 125 DEGs in pancreas samples of both panda species. Table S4. Significantly enriched GO categories for shared down-regulated DEGs in liver samples of both panda species. Table S5. Significantly enriched KEGG pathways for shared down-regulated DEGs in liver samples of both panda species. Table S6. Significantly enriched GO categories for shared up-regulated DEGs in liver samples of both panda species. Table S7. Significantly enriched KEGG pathways for shared up-regulated DEGs in liver samples of both panda species. Table S8. Significantly enriched GO categories for shared down-regulated DEGs in pancreas samples of both panda species. Table S9. Significantly enriched KEGG pathways for shared down-regulated DEGs in pancreas samples of both panda species. Table S10. Significantly enriched GO categories for shared up-regulated DEGs in pancreas samples of both panda species. Table S11. Significantly enriched KEGG pathways for shared up-regulated DEGs in pancreas samples of both panda species. Table S12. Transcription factors of shared down-regulated DEGs in both panda species. Table S13. Putative NR3C1 and promoter of AASS binding sites, identified by JASPAR. Table S14. RLU radio of firefly luciferase and renilla luciferase in five repeated experiments. Table S15. Shared up-regulated DEGs associated with carbohydrate metabolism and energy production in liver and pancreas of both panda species. The detailed information on gene function, involved pathways and annotations are from GeneCards databases ( https://www.genecards.org/ ). Table S16. Shared down-regulated DEGs related to lysine degradation in liver of both panda species. The detailed information on gene function, involved pathways and annotations are from GeneCards databases ( https://www.genecards.org/ ). Table S17. Shared down-regulated DEGs associated with lipid metabolism in liver and pancreas of both panda species. The detailed information on gene function, involved pathways and annotations are from GeneCards databases ( https://www.genecards.org/ ). Table S18. The samples that used to do RT-qPCR. Table S19. The primer of RT-qPCR. Table S20. Relative expression levels of each gene verified by RT-qPCR.