Designed MSAs guide AlphaFold for improved modeling of loop-mediated protein-protein interactions
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Supplementary data: Datasets of crystallized binding complexes for nanobodies and monobodies ProteinMPNN-based multiple sequence alignments Predictions with AlphaFold-Multimer (AFM), AlphaFold3 (AF3, using 1 or 100 seeds) Predictions with AFM and AF3 using ProteinMPNN-based MSAs (here referred to as AFM-MPNN and AF3-MPNN) Accuracy scores for all structure predictions Authors: Lourdes Carcelén*, Alexandre Casadesús* and Enrique Marcos *These authors contributed equally to this work Correspondence to: embcri@ibmb.csic.es
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Zenodo创建时间：
2025-11-17
