Individual SNPs and indels associated with antrum or corpus were not detected in this individual.

Nucleotide positions of SNP or indel unique to recent isolates are reported with contingency tables showing number of isolates from corpus and antrum with and without a polymorphism in that position as compared to isolates outside that region. Statistical significance was determined with a Fisher’s exact test. Raw and false discovery rate corrected p-values are reported with p-values <0.05 considered statistically significant. (A)Table of recent SNPs (n = 1,379) unique to corpus isolates (corpus, n = 12) compared to isolates originating from other biopsy sites (other, n = 15). (B) Table of recent SNPs (n = 1,379) unique to antrum isolates (antrum, n = 12) compared to isolates originating from other biopsy sites (other, n = 15). (C) Table of recent indels (n = 372) unique to corpus isolates (corpus, n = 12) compared to isolates originating from other biopsy sites (other, n = 15). (D) Table of recent indels (n = 372) unique to antrum isolates (antrum, n = 12) compared to isolates originating from other biopsy sites (other, n = 15). (XLSX)