Table S1 - A Model for Carbohydrate Metabolism in the Diatom Phaeodactylum tricornutum Deduced from Comparative Whole Genome Analysis

Genes involved in carbohydrate pathways in the diatom Phaedactylum tricornutum as assessed from the genome publicly available at http://genome.jgi-psf.org/Phatr2/Phatr2.home.html. For every identified gene the following information is given: enzyme name; common abbreviation; designated pathway; Protein ID; GenBank accession number (if available); number of isogenes identified; genomic coordinates; best BLAST hit: gene, organism, % identity, GenBank accession number; targeting predictions: mTP: mitochondrial targeting peptide score, SP: signal peptide score, other: probability for other localization, Loc: Prediction of localization, based on the scores of TargetP, RC: reliability class, 1 = strong, 5 = poor prediction, TPlen: length of transit peptide, regions of proposed signal peptide cleavage site; assigned localization: overall targeting prediction; respective data for homologous T. pseudonana genes if identified. Targeting predictions were performed by TargetP (http://www.cbs.dtu.dk/services/TargetP/) [133] and SignalP's (http://www.cbs.dtu.dk/services/SignalP/) Neuronal networks (NN) [129] or Hidden Markov Models (HMM) [130]. For a detailed description of protein localization prediction see also [134]. The Protein IDs and genomic coordinates are directly linked to the genomic database. (0.31 MB XLS)