Additional file 2 of Heterosis analysis and underlying molecular regulatory mechanism in a wide-compatible neo-tetraploid rice line with long panicles

Additional file 2: Table S1. Origin and genotypes of autotetraploid and neo-tetraploid rice lines at pollen sterility loci, Sa, Sb, and Sc, and embryo sac fertility locus (S5), and their agronomic traits. Table S2. Means of mid-parent and high-parent heterosis in F1 during two seasons of 2017 and 2018. Table S3. Means of agronomic traits of F1 in two seasons of 2017 and 2018. Table S4a. Codes and names of the parents, hybrids, tissues and development stages. Table S4b. Summary of clean reads of transcriptome data from the two F1 hybrids (H1 × H8 and T485 × H8) and their parents. Table S5 Differentially expressed genes associated with the F1 hybrids compared to parents in flag leaf, leaf sheath, spikelet and main panicle axis. Table S6 Differentially expressed genes associated with parents in flag leaf, leaf sheath, spikelet and main panicle axis. Table S7 Gene IDs of differentially expressed genes that uniquely associated with F1 compared to parents and specific (DEGFu-sp) to flag leaf, leaf sheath, spikelet and main panicle axis. Table S8a Prominent functional categorization of genes in the eight tissues before and 5 days after flowering in the F1 hybrid (H1 × H8) by Gene ontology (GO) enrichment analysis. Table S8b Prominent functional categorization of genes in the eight tissues before and 5 days after flowering in the F1 hybrid (T485 × H8) by Gene ontology (GO) enrichment analysis. Table S8c List of the functional categorization of genes in the hybrids by Gene ontology (GO) enrichment analysis. Table S8d Common prominent functional categorization of genes by Gene ontology (GO) enrichment analysis. Table S8e KEGG Pathway analysis of DEGFu-sp to the two hybrids.