European ash pangenome reveals widespread structural variation and genetic basis of low ash dieback susceptibility

Files associated with the publication "European ash pangenome reveals widespread structural variation and genetic basis of low ash dieback susceptibility" Preprint: https://doi.org/10.1101/2025.07.16.665114 #Files BATG-1.0_annotation_v1.0.gtf - gtf file for BATG-1.0 annotation. Genes named FexB00001, FexB00002 etc. FexPG_v1.0_SVs.bcf - bcf file of SVs used to construct pangenome, alongside BATG-1.0 fasta FexPG_v1.0_graph.vg - graph pangenome constructed from bcf above and BATG-1.0 fasta using vg construct FexPG_annotation.bed - bed file outlining the location of the total gene set in the pangenome. Second and third columns are locations in BATG-1.0 co-ordinate space. Fourth and Fifth columns correspond to start and end locations of a feature including within SVs: i) location in BATG-1.0, ii) a "+", iii) SV type, iv) location within the SV (distance from start of breakpoint). FexPG_annotation.proteins.fa - protein coding sequences for the total gene set in the pangenome. Genes not already present in BATG-1.0 are named FexPG000001, FexPG00002 etc. FexPG_All_SVs.bcf - complete set of SVs called across all samples (i..e before filtering for SVs called in more than 3 individuals). Low_ADB_associated_SNPs - genomics locations of 220 SNPs associated low ADB susceptibility