Insights into the Chloroplast Genome Diversity of the Genus Isatis in China: Supplementary Figures and Data

This dataset contains the supplementary figures and data for the manuscript "Insights into the Chloroplast Genome Diversity of the Genus Isatis in China".Included Files:Supplementary Material 1 - Samples for Phylogenomic and Spacer Analyses.Supplementary Material 2 - List of Abbreviations.3.Supplementary Material 3 - SSR Dataset.Fig. 1. Morphological characteristics of seven Isatis species. Fig. 2. Circular chloroplast genome map of Isatis species.Fig. 3. Comparison of the junction sites between the single-copy and IR regions in Isatis chloroplast genomes. Fig. 4. Whole-genome alignment and sequence divergence analysis of the seven Isatis chloroplast genomes. Fig. 5. Analysis of SSRs in Isatis chloroplast genomes. Fig. 6. Sliding window analysis of nucleotide diversity (π) in Isatis chloroplast genomes. Fig. 7. Codon usage bias in Isatis chloroplast protein-coding genes. Fig. 8. Phylogenomic reconstruction of Isatis and the tribe Isatideae using whole chloroplast genomes. Fig. 9. Phylogenetic analysis of 41 Isatis accessions based on the rpl32–trnL intergenic spacer. These materials support all genomic and phylogenetic analyses presented in the manuscript.