Synaptic encoding of vestibular sensation regulates movement timing and coordination

HamlingSchoppik2021 
Data/Code Repository Notes

Note: All code was written and tested on Matlab R2017b 

0) Uncompress the tar files as follows:
Code.tar.gz into HamlingSchoppik2021/Code/
Anatomy.tar.gz,Behavior.tar.gz,CCShake.tar.gz,EPSCShake.tar.gz,HypDep.tar.gz,IPSCShake.tar.gz,NefmaLesionBackfillControl.tar.gz,NefmaPAGFPComparison.tar.gz,RecordingProperties.tar.gz,SpontCC.tar.gz,SpontaneousEPSC.tar.gz,SpontaneousIPSC.tar.gz into HamlingSchoppik2021/ProcessedData/
LesionsDay1.tar.gz,LesionsDay2.tar.gz,NefmaControls.tar.gz,NefmaLesions.tar.gz,PA-GFPcontrols.tar.gz,PA-GFPlesion.tar.gz into /HamlingSchoppik2021/RawBehaviorData/

LesionsDay1ByDate.tar.gz,LesionsDay2ByDate.tar.gz,NefmaControlsByDate.tar.gz,NefmaLesionsByDate.tar.gz,PA-GFPcontrolsByDate.tar.gz,PA-GFPlesionByDate.tar.gz into /HamlingSchoppik2021/RawBehaviorData_byExpt/
and
RawEphysData2015.tar.gz,RawEphysData2016.tar.gz,RawEphysData2017.tar.gz into /HamlingSchoppik2021/RawEphysData

1) (on a mac) Add HamlingSchoppik2021 to the Desktop

2) Add HamlingSchoppik2021 to Matlab path

3) If starting from Raw Data (optional):
Run preprocessData.m to take process raw Ephys data and raw behavioral data. Processed ephys data will save in folders in /ProcessedData.  Processed behavioral data will save in the RawBehaviorData folders. 
Pull all Behavior folders from /RawBehaviorData and /RawBehaviorData_byExperiment into /ProcessedData/Behavior for further plotting. 

4) If starting from Processed Data (recommended):
Run code in /HamlingSchoppik2021/Code for each figure. These codes call functions from /Code/calledFunctions. 
The code for each figure can be run independently (they do not need to be called in any order)
Each code makes figures for a main figure, calculates any stats that are in the text for that figure, and makes any supplementary figures associated with that figure. (With exception of Figure S1 which has its own code).