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Plotting ancestral states from MCMCglmm example

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Figshare2019-02-22 更新2026-04-29 收录
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https://figshare.com/articles/dataset/Plotting_ancestral_states_from_MCMCglmm_example/7756526
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R code that takes tip and internal node model estimates from MCMCglmm phylogenetic mixed model, and associates them with the tree, so it you can output a tree file and read into figtree (https://github.com/rambaut/figtree/releases) to make pretty colour gradients of states across the tree e.g. https://doi.org/10.1371/journal.ppat.1007185.g002Make sure to add the Nexus block to the final .tre file:"#NEXUSBegin trees;”then your tree“End;”Data from Roberts et al. 2018 https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1007185
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2019-02-22
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