Sequencing Caenorhabditis plicata

Note: we know there to be a significant amount of bacterial contamination in these sequence files. The genome also appears to have a significant amount of heterozygosity. Data summary: 140926_D00261_0175_AC5N33ANXX_1_IL-TP-020_[1/2].sanfastq.gz | genomic | insert: 350 140926_D00261_0175_AC5N33ANXX_1_IL-TP-027_[1/2].sanfastq.gz | genomic | insert: 550 141127_M00689_0177_000000000-A8LBC_1_IL-TP-027_[1/2].sanfastq.gz | genomic | insert: 500 141020_D00200_0226_BC4PFJANXX_5_IL-TP-006_[1/2].sanfastq.gz | transcriptomic | insert: 150 Study description: DNA and RNA were isolated from Caenorhabfditis plicata at the Félix lab in Paris. Two genomic libraries of differing insert-size were prepared by Edinburgh Genomics and each was sequenced as paired-end using Illumina HiSeq 2500. Another genomic library was also prepared and sequenced as paired-end using Illumina MiSeq. A single PE run of RNA-seq data was also generated. Caenorhabditis plicata genome sequencing is part of the collaborative Caenorhabditis Genomes Project. Edinburgh Genomics was carried out the sequencing using Illumina platforms. Visit caenorhabditis.bio.ed.ac.uk to browse genome assemblies, download “cleaned” reads and find out more.