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Genome assemblies, gene models, gene annotations, taxonomy classifications, clusters, and counts tables

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DataCite Commons2022-10-14 更新2024-08-18 收录
下载链接:
https://figshare.com/articles/dataset/Genome_assemblies_gene_models_gene_annotations_taxonomy_classifications_clusters_and_counts_tables/20263974
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资源简介:
<strong>File description:</strong> * .fa.gz - Metagenome-assembled genomes * .faa.gz - Proteins (Amino-acid space) * .ffn.gz - ORFs (DNA space) * .gff.gz - Gene models (GFF3) * clusters.tsv.gz - [MAG, SLC] identifier mapping (No header) * taxonomy_classification.tsv.gz - Taxonomy classifications for MAG * taxonomy_classification.clusters.tsv.gz - Taxonomy classifications for SLC * genome_quality.tsv.gz - Genome quality assessment * genome_statistics.tsv.gz - Genome assembly statistics * identifier_mapping.tsv.gz - [ORF, contig, MAG] identifier mapping (No header, tab-separated) * identifier_mapping.orthogroups.tsv.gz - [ORF, contig, MAG, SLC, SSO] identifier mapping (Includes header, tab-separated) <br> <strong>Abbreviations:</strong> ORF - Open reading frame MAG - Metagenome-assembled genome SLC - Species-level cluster SSO - SLC-specific orthogroup <br> <strong>Citation:</strong> * Espinoza, J.L., Dupont, C.L. VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes. <em>BMC Bioinformatics</em> <strong>23</strong>, 419 (2022). https://doi.org/10.1186/s12859-022-04973-8 * Espinoza, Josh (2022): Genome assemblies, gene models, gene annotations, taxonomy classifications, clusters, and counts tables. figshare. Dataset. https://doi.org/10.6084/m9.figshare.20263974.v1
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figshare
创建时间:
2022-07-07
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