The number of orthogroups assigned to each pangenome category and their frequency across the 1,239 genome assemblies.

Orthogroups present in >90% of the 1,239 genomes were designed as “core” orthogroups. Orthogroups assigned to the “softcore” category were present in >80% but <90% of the species. The “shell” orthogroups were present in >50% but <80% of the species. Orthogroups present in <50% of the species were considered “variable” and those present in only one species were called “singletons”.
(XLSX)