Conservation genetics of the endangered Del Mar manzanita (Arctostaphylos glandulosa supsp. crassifolia) based on RAD sequencing data

Del Mar manzanita (Arctostaphylos glandulosa Eastw. subsp. crassifolia (Jeps.) P.V. Wells) is a federally listed endangered shrub found in San Diego County, California and Baja California, Mexico. This manzanita forms part of the imperiled southern maritime chaparral of southwestern California and adjacent Baja California, Mexico. Del Mar manzanita is problematic to identify because of morphological intergradation with other subspecies of A. glandulosa. Such intergradation could result from biological phenomena, such as gene flow among subspecies. Alternatively, it could be that the current circumscription of the Del Mar manzanita is not correct, and that the morphological characters used to diagnose this subspecies are inaccurate indicators of underlying genetics. This situation leads to problems for conservation planning, where accurate identification of individual plants is essential. Here, we used high-throughput sequencing of restriction-site associated DNA markers (RADseq) to deve...