Additional file 2: Table S1. of Comparison of a teratogenic transcriptome-based predictive test based on human embryonic versus inducible pluripotent stem cells

“Developmental probe sets” significantly deregulated on day 14 with respect to day 0 for foreskin, IMR90 and H9 cell lines (absolute fold change ≥ 2, false discovery rate-corrected p value < 0.05). Table S2. “Deregulated probe sets” by valproic acid (VPA) on day 14 with respect to control on day 14 in foreskin, IMR90 and H9 cell lines (absolute fold change ≥ 2, false discovery rate-corrected p value < 0.05). Table S3. List of significant biological processes (Gene Ontology categories; GOs) captured by “upregulated developmental genes” in foreskin, IMR90 and H9 cell lines (absolute fold change ≥ 2, false discovery rate-corrected p value < 0.05). Table S4. List of significant biological processes (Gene Ontology categories; GOs) captured by “downregulated developmental genes” in foreskin, IMR90 and H9 cell lines (absolute fold change ≥ 2, false discovery rate-corrected p value < 0.05). Table S5. Differentially expressed developmental genes belonging to the three germ layers and deregulated by valproic acid (VPA) (absolute fold change ≥ 2, false discovery rate-corrected p value < 0.05). Table S6. Probe sets significantly deregulated on day 0 among foreskin, IMR90 and H9 cell lines (absolute fold change ≥ 2, false discovery rate-corrected p value < 0.05). Table S7. List of significant biological processes (Gene Ontology categories; GOs) captured by valproic acid (VPA) downregulated probe sets on day 14 in differentiated foreskin, IMR90 and H9 cell lines (absolute fold change ≥ 2, false discovery rate-corrected p value < 0.05). Table S8. List of significant biological processes (GOs) captured by valproic acid (VPA) downregulated probe sets on day 14 in differentiated foreskin, IMR90 and H9 cell lines (absolute fold change ≥ 2, false discovery rate-corrected p value < 0.05). (XLSX 1225 kb)