DATASET S3: Data used for the differential expression analyses in the article: Transcriptomic profile of the cockle Cerastoderma edule exposed to Diarrhetic Shellfish Toxins seasonal contamination. Domínguez-Pérez, D. et al., 2021.

47496_isoforms.box: 47,496 ORFs encoded by 33,665 genes in .box format exported by the
OmicsBox v1.4.11, formerly used to retrieve all the related isoforms for differential expression analyses.

relative_counts_per_category_[counts_isoforms].pdf: Relative counts per isoform/transcript obtained for isoform/gene-level quantification.

counts_genes.box and counts_isoforms.box: The resulting count tables in .box format exported by OmicsBox v1.4.11, corresponding to the expression estimated at gene-level and isoform-level, respectively.

omicsbox_count_table_genes.txt and omicsbox_count_table_isoforms.txt: The resulting count tables in .text format exported by OmicsBox v1.4.11, corresponding to the expression estimated at gene-level and isoform-level, respectively.

ce_dge_vs_ce_dgc.box and ce_ge_vs_ce_gc.box: Results of the differential expression analyses in .box format exported by OmicsBox v1.4.11, corresponding to the pairwise comparison between exposed samples to DSTs and control obtained from the digestive gland (ce_dge_vs_ce_dgc.box) and gills (ce_ge_vs_ce_gc) of the cockle C. edule.

pairwise_differential_expression_wr_ce_dge_vs_ce_dgc.pdf: Summary file of the differential expression analyses from the digestive gland of the cockle C. edule. The pairwise comparison was performed between samples exposed to DSTs and control (without DSTs), using NOISeq v2.30.0, with 5 technical replicates simulated per sample and p-value 0.01.

pairwise_differential_expression_wr_ce_ge_vs_ce_gc.pdf: Summary file of the differential expression analyses from the gills of the cockle C. edule. The pairwise comparison was performed between samples exposed to DSTs and control (without DSTs), using NOISeq v2.30.0, with 5 technical replicates simulated per sample and p-value 0.01.

normalized_counts_ce_dge_vs_ce_dgc.txt: Normalized counts obtained from the differential expression analyses from the digestive gland of the cockle C. edule. The pairwise comparison was performed between samples exposed to DSTs and control (without DSTs), using NOISeq v2.30.0, with 5 technical replicates simulated per sample and p-value 0.01.

normalized_counts_ce_ge_vs_ce_gc.txt: Normalized counts obtained from the differential expression analyses from the gills of the cockle C. edule. The pairwise comparison was performed between samples exposed to DSTs and control (without DSTs), using NOISeq v2.30.0, with 5 technical replicates simulated per sample and p-value 0.01.

47496_isoforms.box：由33,665个基因编码的47,496个开放阅读框（ORFs）以.box格式导出，由OmicsBox v1.4.11生成，该格式曾用于检索差异表达分析相关的所有等位基因。
relative_counts_per_category_[counts_isoforms].pdf：针对等位基因/基因水平的量化获取的相对计数。
counts_genes.box 和 counts_isoforms.box：由OmicsBox v1.4.11导出的结果计数表，以.box格式呈现，分别对应基因水平和等位基因水平的表达估计。
omicsbox_count_table_genes.txt 和 omicsbox_count_table_isoforms.txt：由OmicsBox v1.4.11导出的结果计数表，以.text格式呈现，分别对应基因水平和等位基因水平的表达估计。
ce_dge_vs_ce_dgc.box 和 ce_ge_vs_ce_gc.box：OmicsBox v1.4.11导出的差异表达分析结果，以.box格式呈现，对应于暴露于DSTs的样本与来自消化腺（ce_dge_vs_ce_dgc.box）和鳃（ce_ge_vs_ce_gc）的控制样本之间的配对比较。
pairwise_differential_expression_wr_ce_dge_vs_ce_dgc.pdf：来自扇贝C. edule消化腺的差异表达分析的总结文件。配对比较是通过NOISeq v2.30.0进行的，比较了暴露于DSTs的样本与未暴露于DSTs的控制样本（无DSTs），每个样本模拟5个技术重复，p值为0.01。
pairwise_differential_expression_wr_ce_ge_vs_ce_gc.pdf：来自扇贝C. edule鳃的差异表达分析的总结文件。配对比较是通过NOISeq v2.30.0进行的，比较了暴露于DSTs的样本与未暴露于DSTs的控制样本（无DSTs），每个样本模拟5个技术重复，p值为0.01。
normalized_counts_ce_dge_vs_ce_dgc.txt：来自扇贝C. edule消化腺差异表达分析的标准化计数。
normalized_counts_ce_ge_vs_ce_gc.txt：来自扇贝C. edule鳃差异表达分析的标准化计数。