Resources and data on the recombination landscape of the harlequin fly and its Cla-element

This dataset contains phased files of Chironomus riparius from MELT, iSMC and bedtools, such as supporting files. For further details also check the GitHub page: https://github.com/lpettrich/Crip_RecombinationLandscape_HB_2025 Populations: Hesse in Germany = MG Rhône-Alpes in France = MF Lorraine in France = NMF Piemont in Italy = SI Andalusia in Spain = SS MELT: MELT ouput with added info on population and numbered insertions reflecting all 441 detected Cla insertions. iSMC: Recombination rate rho in 10 kb windows and 100 kb windows along the genome. bedtools closest ismc 1 kb Cla: Bedtools closest analysis of the distance of the next Cla-element to the recombination rate rho in 1 kb windows. bedtools closest ismc 10 kb Cla: Bedtools closest analysis of the distance of the next Cla-element to the recombination rate rho in 10 kb windows. bedtools closest ismc 100 kb Cla: Bedtools closest analysis of the distance of the next Cla-element to the recombination rate rho in 100 kb windows. bedtools closest ismc 1 kb HB: Bedtools closest analysis of the distance of the next haplotype block to the recombination rate rho in 1 kb windows. input-files figures: Supporting files needed to create figures.