Additional file 4 of Phylogenomic assessment of 23 equid alphaherpesvirus 1 isolates obtained from USA-based equids
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Additional file 4: Table S26. Detailed results of manual bootscan recombination detection performed using an alignment containing all 137 EHV-1 isolates in RDP version 4.100 (33) (window = 1200, step = 500, replicates = 100, Jin and Nei model). Bootstrap support values of 70% or greater were considered reliable evidence of possible recombination. Evidence of recombination events was detected in most (20/23) of the newly sequenced EHV-1 isolates by manual bootscan.
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2024-08-14
