Additional file 7 of An enhanced photosynthesis and carbohydrate metabolic capability contributes to heterosis of the cotton (Gossypium hirsutum) hybrid ‘Huaza Mian H318’, as revealed by genome-wide gene expression analysis

Additional file 7: Table S1. Basic quality of sequencing data. Table S2. Reads distribution and annotation in genome. Table S3. The FPKM value of annotated and novel genes. Table S4. All DEGs from RNA sequencing. Table S5. Significant GO terms in 945 DEGs screened with condition of p-value < 0.05 and |log2(FPKM + 1.5)| > 1. GO terms were listed with gene number ≥ 10, q-value < 0.05. Table S6. KEGG pathway analysis of 945 DEGs with q-value < 0.05 using KOBAS3.0 ( http://kobas.cbi.pku.edu.cn/ ). Table S7. The expression patterns of DEGs in GO terms ‘oxidation-reduction process’, ‘lipid metabolic process’ , ‘carbohydrate metabolic process’and ‘photosynthesis’. Table S8. The primers used in this study.