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Archived fastq files, data tables, BLAST alignments and scripts for the study "External DNA contamination and efficiency of bleach decontamination for arthropod diet analysis" by Huszarik et al. (2023) https://doi.org/10.1002/edn3.410

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DataCite Commons2023-03-29 更新2024-08-18 收录
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https://figshare.com/articles/dataset/Archived_fastq_files_data_tables_BLAST_alignments_and_scripts_for_the_study_External_DNA_contamination_and_efficiency_of_bleach_decontamination_for_arthropod_diet_analysis_by_Huszarik_et_al_/21197788/2
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资源简介:
Includes all raw fastq files, fasta files as well as read abundance ASV tables and taxonomic presence/absence tables, sample ID information, and scripts for the DADA2 pipeline and BLASTn. <br> File information: <strong>ASVdata_long_XX</strong> is the presence/absence information for each primer pair in long format (no longer ASV table) <strong>PresAbs_asv_table_XX </strong>is the annotated ASV table with presences marked as "1" where each ASV was detected in a sample <strong>TaxonReads_asv_table_XX</strong> is the ASV reads table with taxonomic information added to the ASVs <strong>BLAST_100hits_XX</strong> is the output of BLAST first 100 hits used to obtain taxonomic information for each ASV sequence and includes a comparison with the first 5 hits <strong>Additional ASV BLASTs.rar </strong>contains hits for ASVs with extra BLAST alignments <strong>BLASTinput.txt </strong>is the input command for BLASTn <strong>RAW_sequence_table_XX</strong> is the raw ASV table produced by the DADA2 pipeline, with reads of each ASV sequence present in each sample
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figshare
创建时间:
2023-03-29
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