Additional file 6 of Genetic impacts on DNA methylation help elucidate regulatory genomic processes

Additional file 6. Summary statistics of Summary-based Mendelian Randomisation with GWAS data. TSV file with the following fields: (1) CpG: CpG ID. (2) Trait: phenotypic trait ID. (3) Class: phenotypic class of trait. (4) SNP: SNP ID in the format of chr:pos, tested for co-localisation. (5–6) chr_cpg, pos_cpg: chromosome and position of CpG. (7) gene_cpg: gene annotated to the CpG. (8–9) chr_snp, pos_snp: chromosome and position of SNP. (10) A1: effect allele. (11) A2: alternative allele. (12) Freq: frequency of A1. (13–15) b_GWAS, se_GWAS, p_GWAS: coefficient estimate, standard error and p-value from the GWAS association. (16–18) b_meQTL, se_meQTL, p_meQTL: coefficient estimate, standard error and p-value from the meQTL association. (19–21) b_SMR, se_SMR, p_SMR: coefficient estimate, standard error and p-value from the SMR. (22) p_HEIDI: p-value from HEIDI. (23) nsnp_HEIDI: number of SNPs used in the HEIDI test.