Additional file 12 of Proteogenomic characterization of difficult-to-treat breast cancer with tumor cells enriched through laser microdissection

Additional file 12. Table S5. Differential biological pathways and functions between DTBC and LumA. (A) Genes and proteins that are significantly differentially expressed and share overlapping agreement in their upregulation (green) and downregulation (orange) between DTBC and LumA. (B) Genes that are significantly differentially expressed between DTBC and LumA and are linked to the IPA cell proliferation regulator network. The table concludes with the listing of 7 recognized IPA regulators, which are highlighted in yellow. (C) Proteins that are significantly differentially expressed between DTBC and LumA and are associated with the FOXC1 regulator network. (D) Predicted molecular functions by IPA for the differentially expressed phosphopeptides between DTBC and LumA.