Additional file 3: Table S1. of A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

Alignment metrics for all samples. For each sample, the following metrics are listed for each combination of platform and alignment algorithm: total number of reads (Ion Torrent) or read pairs (Illumina), percentage of uniquely-aligned reads, percentage of multimapped reads, percentage of unaligned reads, percentage of uniquely-aligned reads aligned to gene regions, percentage of multimapped reads aligned to gene regions, percentage of uniquely-aligned reads aligned to exonic regions, percentage of multimapped reads aligned to exonic regions, percentage of uniquely-aligned reads aligned to intronic regions, percentage of multimapped reads aligned to intronic regions, percentage of uniquely-aligned reads aligned to intergenic regions, and percentage of multimapped reads aligned to intergenic regions. (XLSX 17Â kb)