2025-porcine-scRNAseq

This repository contains the h5 files generated from Cell Ranger outputs, the processed scRNA-seq data (h5ad), and the scripts used to produce all analyses and figures in the manuscript. The final_scripts folder includes the notebooks and R/Python code for cell-type analyses, preprocessing, quality control, trajectory inference, and cell–cell communication.cat adata.zip.part000-001 adata.zip.part002-003 adata.zip.part004-005 adata.zip.part006-007 adata.zip.part008-009 adata.zip.part010-011 adata.zip.part012-013 adata.zip.part014-015 adata.zip.part{016..097} > adata.zipcat h5ad_raw_files.zip.part* > h5ad_raw_files.zipshasum -a 256 -c SHA256SUMS.txt