Table S1 - Experimental Evolution of <em>Legionella pneumophila</em> in Mouse Macrophages Leads to Strains with Altered Determinants of Environmental Survival

Whole genome resequencing of several clones from each lineage. Illumina reads were aligned by reference assembly to both the published L. pneumophila Philadelphia-1 genome and to contigs from the progenitor strain. These alignments were used to identify mutations present in each strain. Each individual mutation was observed in isolates marked with an asterisk. Strain names in italics represent time-points and clones chosen for sequencing in order to explain population behavior identified in Figure 2. Two isolates from day 180 of the C lineage were sequenced, day 180 and day 180′. (PDF)