Genotyping raw data for a set of 11 SNPs in ACKR1 gene associated with Duffy blood group system expression and its isoforms for 1,101 individuals from Mauritania.

This file is derived from concatenated variant calling files (.vcf) for all individual. Each line corresponds to a genomic position at 11 selected loci on ACKR1 gene (RefSeq: NG_011626.3) for all individual. Sample: sample name. CHROM: reference genome on which sequence reads have been aligned on. POS: SNP position on the reference genome. REF: reference base at the position. ALT: alternate base at the position. QUAL: Phred-scaled quality score. GT: genotype with the allele values 0 for the reference allele (what is in the REF field) and 1 for the first allele listed in ALT so that 0_0 refers to samples homozygous reference, 0_1 refers to samples heterozygous (carrying one copy of each of the REF and ALT allele) and 1_1 refers to sample homozygous alternate. Phred-scaled genotype likelihoods rounded to the closest integer (PL) were given for all genotypes. The PL values of the most likely genotype (assigned in the GT field) is set to 0 in the Phred scale. Genotype: GT field modification to improve readability. Depth: read depth at this position. Run: identification of the sequencing run in which the sample was sequenced. All other information contained in the variant calling file are in the INFO field. (XLSX)