Genetic basis of immunity in Indian cattle as revealed by comparative analysis of Bos genome

This repository contains the genomic variants, such as single-nucleotide variations (SNV), insertions, and deletions identified by the GATK tool associated with the manuscript titled "Genetic basis of immunity in Indian cattle as revealed by comparative analysis of the Bos genome", submitted to Scientific Reports. The data represent genomic variations identified in Bos indicus (Nelore breed, n=14) and Bos indicus (Gir breed, n=20) with a focus on identifying genomic variation located on the immune-related genes, on the basis that indicine cattle have inherent disease resistance capability compared to taurine cattle (Exotic breed). File InformationFormat: Annotated variant data in CSV formatData Source: The whole-genome sequence data were retrieved from the NCBI Sequence Read Archive (SRA) for the Nelore (n=14) and Gir (n=20) breeds Variant identification: Variants were identified using GATKAnnotation: Variants were annotated using SnpEff