Supporting data for "Pylogenomics and comparative transcriptomics of selected clades in the early divergent angiosperm family Annonaceae: unlocking patterns of flora evolution, pollination ecology, and evolutionary diversification"

Filename: Chapter 2 The supporting data for the chapter2 of the thesis, including two folders: one folder ("alignment_file_of_protein_coding_genes")contains 70 aligned protein coding genes .txt documents; the other folder ("complete_chloroplast_genome_fasta_files")contains 62 species complete chloroplast genome .txt documents. Filename: Chapter 3 The supporting data for the chapter3 of the thesis, including two folders: one folder ("Unigenes") contains three .txt files of assembled unigenes of three species; the other folder ("DEGs") contains three .csv files of the different expression genes parameters of limestone samples to non-limestone samples within each species.Filename: Chapter 4 The supporting data for the chapter4 of the thesis, including two .csv and one .txt documents:"Biogeography_area_region.csv" is biogeographical regions information for each species; "niche_data.csv" contains GPS locations and 19 climatic variables for each individuals;"final_dated_tree_with_95HPD.txt" is the dated phylogenetic tree with 95% highest probability density (HPD) intervals value. Filename: Chapter 5 The supporting data for the chapter5 of the thesis, including one .csv, and one .txt documents: "niche_data.csv" includes GPS locations and 19 climatic variables for each individuals; "final_dated_tree_with_95HPD.txt" is the dated phylogenetic tree with 95% highest probability density (HPD) intervals value.

Filename: 第二章节 论文第二章节所依托的数据，包括两个文件夹：一个文件夹（"蛋白质编码基因对齐文件"）包含70个对齐的蛋白质编码基因.txt文档；另一个文件夹（"完整叶绿体基因组fasta文件"）包含62种物种的完整叶绿体基因组.txt文档。 Filename: 第三章节 论文第三章节所依托的数据，包括两个文件夹：一个文件夹（"Unigenes"）包含三个物种组装的unigene.txt文件；另一个文件夹（"DEGs"）包含每个物种内石灰岩样本与非石灰岩样本中差异表达基因参数的三份.csv文件。Filename: 第四章节 论文第四章节所依托的数据，包括两个.csv文件和一个.txt文件："Biogeography_area_region.csv"包含每个物种的生态地理区域信息；"niche_data.csv"包含每个个体的GPS位置和19个气候变量；"final_dated_tree_with_95HPD.txt"是带有95%最高概率密度（HPD）区间值的定年系统发育树.txt文件。Filename: 第五章节 论文第五章节所依托的数据，包括一个.csv文件和一个.txt文件："niche_data.csv"包含每个个体的GPS位置和19个气候变量；"final_dated_tree_with_95HPD.txt"是带有95%最高概率密度（HPD）区间值的定年系统发育树.txt文件。