Additional file 2: of Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris

Table S1. Codon usage in genome and subgenome of F. solaris. Codon usage in (A) genome and (B) subgenome of F. solaris in per mil. (A) The table includes the codon usage of all genes predicted in F. solaris, including homoeologous genes, non-homoeologous genes, and genes predicted on scaffolds not assembled on chromosomes. (B) The table includes the codon usage of homoeologous genes and non-homoeologous genes in each subgenome. The values corresponding to Fso_h and Fso_l were written in left (bold) and right (italic) of each column, respectively. Values in parentheses represent the ratio of codon usage between Fso_h and Fso_l (Fso_h / Fso_l); Table S2. Top 10 and bottom 10 loadings of PC1 and PC2 from the PCA based on codon usage frequency; Table S3. tRNA genes discovered in each subgenome of F. solaris; Table S4. Nucleotides sequence motifs discovered in promoter region of consistently biased homoeologous genes in F. solaris; Table S5. Lists of genes which contained the motif TABASTA in promoter region. (XLSX 183 kb)