Data and code for Separating reconstruction, generation and antibacterial activity in antimicrobial peptide design

Version-aligned data and code accompanying the author-written manuscript Separating reconstruction, generation and antibacterial activity in antimicrobial peptide design. This archive contains saved computational observations, original training/development inputs, model implementations and configurations, environment records, seven fixed model checkpoints, laboratory OD600 observations, original MIC summaries and separately labelled retrospective endpoints, supplementary methods and complete editable supplementary tables. The journal manuscript, cover letter, private title page and publisher-owned related article are excluded. Version v7-2026-10-24 updates the author list to Hongsheng Wang, Zihan Zeng, Fei Wu, Feng Lin and Xingxu Huang. Zihan Zeng is the second author, affiliated with Polytechnic Institute, Zhejiang University, Hangzhou, 310015, China, and led wetlab experiments. Xingxu Huang is the fifth author, affiliated with Laboratory of Pancreatic Disease, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310058, China. F.L. and X.X.H. conceived of the study and supervised its performance. Scientific data, model weights, figures, results and the evaluation protocol are unchanged from v6. Offline verification checks saved outputs and file integrity; training, inference and checkpoint deserialization were not rerun. The laboratory panel comprises 27 tested peptides across four strains and is distinct from the computational model comparison. Original MIC summaries and retrospective algorithmic endpoints remain separately labelled. Repository version: https://github.com/wanghongsheng01/bib-amp-review-materials-20261023/tree/v7-2026-10-24 . Rights remain as described in COPYRIGHT_AND_USE.md; public access does not grant a new license to upstream or third-party materials.